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Metin Gurcan

  • Professor, SBS-Biomedical Informatics
  • Professor, COPH-Division of Biostatistics
  • Professor, Pathology
  • 1800 Cannon Drive
    310G Lincoln Tower
    Columbus, OH 43210
  • 614-688-9857

Honors

  • 2015-2020

    USCAP Short Course Presenter. .

  • 2009-2016

    The Ohio State University Comprehensive Cancer Center REAP Award. .

  • 2014

    Nominated for a Distinguished Undergraduate Research Mentor award. .

  • 2013

    Senior Member of SPIE. .

  • 2008-2010

    Young Investigator Award. .

  • 2010

    Best Paper Award. .

  • 2007

    Senior member of IEEE. .

  • 2007

    caBIG Embodying the Vision Award.

  • 1996-1998

    Visiting Researcher. .

  • 1992

    British Foreign Office, Foreign Commonwealth Organization Award.

Books

1999

  • Gurcan MN. 1999. "Computer-aided Diagnosis in Radiology." Ankara: Bilkent University.

1993

  • Gurcan MN. 1993. "An Optical Fibre Link Employing Digital Filtering." Manchester: University of Manchester Institute of Science and Technology.

Unknown

  • Gurcan MN. "Histopathological Image Analysis."

Edited Books

2016

  • Gurcan MN, Madabhushi A. 2016. "Medical Imaging 2016: Digital Pathology." New York: SPIE.

2015

  • Gurcan MN, Madabhushi A. 2015. "Medical Imaging 2015: Digital Pathology." New York: SPIE.

2014

  • Gurcan MN, Madabhushi A. 2014. "Medical Imaging 2014: Digital Pathology." New York: SPIE.

2013

  • Gurcan MN, Madabhushi A. 2013. "Medical Imaging 2013: Digital Pathology." New York: SPIE.

Chapters

2009

  • Catalyurek, U.V.; Hartley, T.; Sertel, O.;Ujaldón, M.; Ruiz, A.; Saltz, J.H.; Gurcan, M.N. 2009. "Processing of Large-Scale Biomedical Images on a Cluster of Multi-Core CPUs and GPUs." In Trends in High Performance and Large Scale Computing, edited by Wolfgang Gentzsch, Lucio Grandinetti, Gerhard Joubert, Amsterdam: IOS Press.

2008

  • Catalyurek, U.V.; Narayanan, S.; Sertal, O.; Kong, J.; Cambazoglu, B.B.; Pan, T.; Sharma, A.; Hastings, S.; Langella, S.; Oster, S.; Kurc, T.; Gurcan, M.N.; Saltz, J.H.. 2008. "Service-based Access to and Processing of Large Scientific Datasets," High Performance Computing (HPC) and Grids in Action." In High Performance Computing (HPC) and Grids in Action, Advances in Parallel Computing, Amsterdam: IOS Press.

1998

  • Gurcan, M. N.; Yardimci, Y.; Cetin, A. E.. 1998. "Microcalcification Detection Using Adaptive Filtering and Gaussianity Tests." In Digital Mammography, edited by Karssemeijer, N.; Thijssen, N.; Hendriks, J.; VanErning, L., 157 - 164. Dordrecht: Kluwer Academic Publishers.

Unknown

  • Gurcan MN. "Image Analysis Fundamentals in Digital Pathology." In Digital Pathology, edited by Liron Pantanowitz and Anil V Parwani,

Journal Articles

2016

  • Goceri E, Shah Z, Layman L, Jiang X, Gurcan MN, 2016, "Quantification of Liver Fat: A Comprehensive Review." Computers in Biology and Medicine 71, 174 - 189.

2015

  • Fauzi,Mohammad,FaizalAhmad; Gokozan,Hamza,Numan; Elder,Brad; Puduvalli,Vinay,K; Pierson,Christopher,R; Otero,José,Javier; Gurcan,Metin,N, 2015, "A multi-resolution textural approach to diagnostic neuropathology reporting.." Journal of neuro-oncology 124, no. 3, 393 - 402.
  • Fauzi,Mohammad,Faizal Ahmad; Pennell,Michael; Sahiner,Berkman; Chen,Weijie; Shana'ah,Arwa; Hemminger,Jessica; Gru,Alejandro; Kurt,Habibe; Losos,Michael; Joehlin-Price,Amy; Kavran,Christina; Smith,Stephen,M; Nowacki,Nicholas; Mansor,Sharmeen; Lozanski,Gerard; Gurcan,Metin,N, 2015, "Classification of follicular lymphoma: the effect of computer aid on pathologists grading." BMC MEDICAL INFORMATICS AND DECISION MAKING 15, 115 -
  • Belhomme,Philippe; Toralba,Simon; Plancoulaine,Benoit; Oger,Myriam; Gurcan,Metin,N; Bor-Angelier,Catherine, 2015, "Heterogeneity assessment of histological tissue sections in whole slide images." COMPUTERIZED MEDICAL IMAGING AND GRAPHICS 42, 51 - 55.
  • Smith B, Arabandi S, Brochhausen M, Calhoun M, Ciccarese P, Doyle S, Gibaud B, Goldberg I, Kahn CE Jr, Overton J, Tomaszewski J, Gurcan MN, 2015, "Biomedical Imaging Ontologies: A Survey and Proposal for Future Work." Journal of Pathology Informatics 6, 37 -
  • Fauzi,Mohammad,Faizal Ahmad; Khansa,Ibrahim; Catignani,Karen; Gordillo,Gayle; Sen,Chandan,K; Gurcan,Metin,N, 2015, "Computerized segmentation and measurement of chronic wound images." COMPUTERS IN BIOLOGY AND MEDICINE 60, 74 - 85.
  • Niazi,Muhammad,KK; Dhulekar,Nimit; Schmidt,Diane; Major,Samuel; Cooper,Rachel; Abeijon,Claudia; Gatti,Daniel,M; Kramnik,Igor; Yener,Bulent; Gurcan,Metin; Beamer,Gillian, 2015, "Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice." DISEASE MODELS & MECHANISMS 8, no. 9, 1141 - 1153.
  • Fauzi,Mohammad,Faizal Ahmad; Gokozan,Hamza,Numan; Elder,Brad; Puduvalli,Vinay,K; Pierson,Christopher,R; Otero,Jose,Javier; Gurcan,Metin,N, 2015, "A multi-resolution textural approach to diagnostic neuropathology reporting." JOURNAL OF NEURO-ONCOLOGY 124, no. 3, 393 - 402.
  • Fauzi,Mohammad,Faizal Ahmad; Pennell,Michael; Sahiner,Berkman; Chen,Weijie; Shana'ah,Arwa; Hemminger,Jessica; Gru,Alejandro; Kurt,Habibe; Losos,Michael; Joehlin-Price,Amy; Kavran,Christina; Smith,Stephen,M; Nowacki,Nicholas; Mansor,Sharmeen; Lozanski,Gerard; Gurcan,Metin,N, 2015, "Classification of follicular lymphoma: the effect of computer aid on pathologists grading." BMC MEDICAL INFORMATICS AND DECISION MAKING 15, 115 -
  • Niazi,Muhammad,KK; Dhulekar,Nimit; Schmidt,Diane; Major,Samuel; Cooper,Rachel; Abeijon,Claudia; Gatti,Daniel,M; Kramnik,Igor; Yener,Bulent; Gurcan,Metin; Beamer,Gillian, 2015, "Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice." DISEASE MODELS & MECHANISMS 8, no. 9, 1141 - 1153.
  • Niazi,Muhammad,KK; Dhulekar,Nimit; Schmidt,Diane; Major,Samuel; Cooper,Rachel; Abeijon,Claudia; Gatti,Daniel,M; Kramnik,Igor; Yener,Bulent; Gurcan,Metin; Beamer,Gillian, 2015, "Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice." DISEASE MODELS & MECHANISMS 8, no. 9, 1141 - 1153.

2014

  • Kornaropoulos,Evgenios,N; Niazi,M,Khalid Khan; Lozanski,Gerard; Gurcan,Metin,N, 2014, "Histopathological Image Analysis for Centroblasts Classification Through Dimensionality Reduction Approaches." CYTOMETRY PART A 85, no. 3, 242 - 255.
  • Niazi,M,Khalid Khan; Beamer,Gillian; Gurcan,Metin,N, 2014, "Detecting and Characterizing Cellular Responses to Mycobacterium tuberculosis From Histology Slides." CYTOMETRY PART A 85, no. 2, 151 - 161.
  • Goceri E, Gurcan MN, Dicle O, 2014, "Fully automated liver segmentation from SPIR image series." Fully automated liver segmentation from SPIR image series 53, 265 - 268.
  • Niazi,M,Khalid Khan; Yearsley,Martha,M; Zhou,Xiaoping; Frankel,Wendy,L; Gurcan,Metin,N, 2014, "Perceptual clustering for automatic hotspot detection from Ki-67-stained neuroendocrine tumour images." JOURNAL OF MICROSCOPY 256, no. 3, 213 - 225.
  • Bokhari S, Catalyurek U, Gurcan MN, 2014, "Massively multi-threaded maxflow for image segmentation on the Cray XMT-2." Journal of Concurrency and Computation: Practice and Experience 26, 2836 - 2855.

2013

  • Mumcuoglu E, Long F, Castile R, Gurcan MN, 2013, "Image Analysis for Cystic Fibrosis: Computer-Assisted Airway Wall and Vessel Measurements from Low-Dose, Limited Scan Lung CT Images." Journal of Digital Imaging 26, no. 1, 82 - 96.
  • Das,Hiranmoy; Wang,Zhihui; Niazi,M,Khalid Khan; Aggarwal,Reeva; Lu,Jingwei; Kanji,Suman; Das,Manjusri; Joseph,Matthew; Gurcan,Metin; Cristini,Vittorio, 2013, "Impact of Diffusion Barriers to Small Cytotoxic Molecules on the Efficacy of Immunotherapy in Breast Cancer." PLOS ONE 8, no. 4, e61398 -
  • Lozanski,Gerard; Pennell,Michael; Shana'ah,Arwa; Zhao,Weiqiang; Gewirtz,Amy; Racke,Frederick; Hsi,Eric; Simpson,Sabrina; Mosse,Claudio; Alam,Shadia; Swierczynski,Sharon; Hasserjian,Robert,P; Gurcan,Metin,N, 2013, "Inter-reader variability in follicular lymphoma grading: Conventional and digital reading.." Journal of pathology informatics 4, no. 30, 1 - 9.

2012

  • Oger,Myriam; Belhomme,Philippe; Gurcan,Metin,N, 2012, "A general framework for the segmentation of follicular lymphoma virtual slides." COMPUTERIZED MEDICAL IMAGING AND GRAPHICS 36, no. 6, 442 - 451.
  • Mahoney,Emilia; Lucas,David,M; Gupta,Sneha,V; Wagner,Amy,J; Herman,Sarah,EM; Smith,Lisa,L; Yeh,Yuh-Ying; Andritsos,Leslie; Jones,Jeffrey,A; Flynn,Joseph,M; Blum,Kristie,A; Zhang,Xiaoli; Lehman,Amy; Kong,Hui; Gurcan,Metin; Grever,Michael,R; Johnson,Amy,J; Byrd,John,C, 2012, "ER stress and autophagy: new discoveries in the mechanism of action and drug resistance of the cyclin-dependent kinase inhibitor flavopiridol." BLOOD 120, no. 6, 1262 - 1273.
  • Payne,Philip,RO; Jackson,Rebecca,D; Best,Thomas,M; Borlawsky,Tara,B; Lai,Albert,M; James,Stephen; Gurcan,Metin,N, 2012, "Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project." JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION 19, no. 6, 1110 - 1114.
  • Mumcuoglu,E,U; Hassanpour,R; Tasel,S,F; Perkins,G; Martone,M,E; Gurcan,M,N, 2012, "Computerized detection and segmentation of mitochondria on electron microscope images." JOURNAL OF MICROSCOPY 246, no. 3, 248 - 265.
  • Akakin,Hatice,Cinar; Gurcan,Metin,N, 2012, "Content-Based Microscopic Image Retrieval System for Multi-Image Queries." IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 16, no. 4, 758 - 769.
  • Samsi S, Krishnamurthy A, Gurcan MN, 2012, "An Efficient Computational Framework for the Analysis of Whole Slide Images: Application to Follicular Lymphoma Immunohistochemistry." Journal of Computational Science 3, no. 5, 269 - 279.

2011

  • Suhre, A; Kose, K; Cetin, AE; Gurcan, MN, 2011, "Content-adaptive color transform for image compression." OPTICAL ENGINEERING 50, no. 5, 1 - 10.
  • Sertel O; Dogdas B; Chiu CS; Gurcan MN, 2011, "Microscopic image analysis for quantitative characterization of muscle fiber type composition.." Computerized Medical Imaging And Graphics 35, no. 7-8, 616 -
  • Ababneh SY; Prescott JW; Gurcan MN, 2011, "Automatic graph-cut based segmentation of bones from knee magnetic resonance images for osteoarthritis research.." Medical Image Analysis 15, no. 4, 438 -
  • Patterson ES; Rayo M; Gill C; Gurcan MN, 2011, "Authors' reply.." Journal Of Pathology Informatics 2, 10 -
  • Belkacem-Boussaid K; Samsi S; Lozanski G; Gurcan MN, 2011, "Automatic detection of follicular regions in H&E images using iterative shape index.." Computerized Medical Imaging And Graphics 35, no. 7-8, 592 -
  • Patterson ES; Rayo M; Gill C; Gurcan MN, 2011, "Barriers and facilitators to adoption of soft copy interpretation from the user perspective: Lessons learned from filmless radiology for slideless pathology.." Journal Of Pathology Informatics 2, 1 -
  • Dundar MM; Badve S; Bilgin G; Raykar V; Jain R; Sertel O; Gurcan MN, 2011, "Computerized classification of intraductal breast lesions using histopathological images.." IEEE Transactions On Bio-Medical Engineering 58, no. 7, 1977 -
  • Kong H; Gurcan M; Belkacem-Boussaid K, 2011, "Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.." IEEE Transactions On Medical Imaging 30, no. 9, 1661 -
  • Lézoray O; Gurcan M; Can A; Olivo-Marin JC, 2011, "Special issue on whole slide microscopic image processing.." Computerized Medical Imaging And Graphics 35, no. 7-8, 493 -
  • Prescott JW; Best TM; Swanson MS; Haq F; Jackson RD; Gurcan MN, 2011, "Anatomically anchored template-based level set segmentation: application to quadriceps muscles in MR images from the Osteoarthritis Initiative.." Journal Of Digital Imaging 24, no. 1, 28 -

2010

  • Gurcan, M.N.; Roysam, B.; Dhawan, A.P.; Wang, L.V, 2010, "Editorial to Special Letters Issue on Emerging Technologies in Multiparameter Biomedical Optical Imaging and Image Analysis." IEEE Transactions on Biomedical Imaging 57, no. 10, 2551 - 2552.
  • Belkacem-Boussaid, K.; Pennell, M.; Lozanski, G.; Shana’ah, A.; Gurcan, M.N, 2010, "Computer-aided classification of centroblast cells in follicular lymphoma." Analytical and Quantitative Cytology and Histology 5, no. 32, 254 - 260.
  • Prescott, J.; Zhang, D.; Wang, J.Z.; Mayr, N.A.; Yuh, W.T.C.; Saltz, J.H.; Gurcan, M.N, 2010, "Temporal Analysis of Tumor Heterogeneity and Volume for Cervical Cancer Treatment Outcome Prediction: Preliminary Evaluation." Journal of Digital Imaging 23, no. 3, 342 - 357.
  • Erter, J; Alinari, L; Darabi, K; Gurcan, M; Garzon, R; Marcucci, G; Bechtel, MA; Wong, H; Porcu, P, 2010, "New Targets of Therapy in T-Cell Lymphomas." CURRENT DRUG TARGETS 11, no. 4, 482 - 493.
  • Swanson, M.; Prescott, J.; Best, T.M.; Powell, K.; Jackson, R.D.; Haq, F.; Gurcan, M.N, 2010, "Semi-automated segmentation to assess the lateral meniscus in normal and osteoarthritis knees." Osteoarthritis and Cartilage 18, no. 3, 344 - 353.
  • Sertel, O.; Lozanski, G.; Shana’ah, A.; Gurcan, M.N, 2010, "Computer-aided Detection of Centroblasts for Follicular Lymphoma Grading using Adaptive Likelihood based Cell Segmentation." IEEE Transactions on Biomedical Imaging 57, no. 10, 2613 - 2616.
  • Samsi, S.; Lozanski, G.; Shana’ah, A.; Krishanmurthy, A.; Gurcan, M.N, 2010, "Detection of follicles from IHC stained slides of follicular lymphoma using iterative watershed." IEEE Transactions on Biomedical Imaging 57, no. 10, 2609 - 2612.

2009

  • Kong, J.; Sertel, O.; Shimada, H;. Boyer, K. L.; Saltz, J. H.; Gurcan, M. N., 2009, "Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation." Pattern Recognition 42, no. 6, 1080 - 1092.
  • Sertel, O.; Kong, J.; Shimada, H.; Catalyurek, U. V.; Saltz, J. H.; Gurcan, M. N., 2009, "Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development." Pattern Recognition 42, no. 6, 1093 - 1103.
  • Sertel, O.; Kong, J.; Catalyurek, U. V.; Lozanski, G.; Saltz, J.; Gurcan, M. N., 2009, "Histopathological image analysis using model-based intermediate representations and color texture: Follicular lymphoma grading." The Journal of Signal Processing Systems 55, 160 - 183.
  • Erdal, S.; Catalyurek, U. V.; Payne, P. R.; Kamal, J.; Saltz, J. H.;Gurcan, M. N., 2009, "A Knowledge-Anchored Integrative Image Search and Retrieval System." Journal of Digital Imaging 22, no. 2, 166 - 182.
  • TrimboliA, Cantemir-StoneCZ, Li F,Wallace JA,Merchant A, Creasap N, Thompson JC, Caserta E, Wang H, Chong J-L, Naidu S, Wei G, Sharma SM, Stephens JA, Fernandez SA, GurcanMN, Weinstein MB, Barsky SH, Yee L, Roso lTJ, Stromberg PC, Robinson ML, Pepin F, Hallett M, Park M, Ostrowski C, Leone G, 2009, "Pten in Stromal Fibroblasts Suppresses Mammary Epithelial Tumors." Nature 461, 1084 - 1091.
  • Prescott, J.; Zhang, D.; Wang, J. Z.; Mayr, N. A.; Yuh, W. T. C.; Saltz, J. H.; Gurcan, M. N., 2009, "Analysis of tumor heterogeneity and temporal change for cancer treatment outcome prediction: Application to cervical cancer." Journal of Digital Imaging 23, no. 3, 342 - 357.
  • Gurcan, M.N.; Boucheron, L.; Can, A.; Madabhushi, A.; Rajpoot, N.; Yener, B, 2009, "Histopathological Image Analysis: A review." IEEE Reviews in Biomedical Engineering 2, 147 - 171.
  • Ruiz,Antonio; Sertel,Olcay; Ujaldon,Manuel; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin,N, 2009, "Stroma classification for neuroblastoma on graphics processors." INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 3, no. 3, 280 - 298.
  • Sharma, A.; Pan, T.; Cambazoglu, B. B.; Hastings, S.; Gurcan, M. N.; Kurc, T.; Saltz, J., 2009, "VirtualPACS- A Federating Gateway to Access Remote Image Data Resources Over the Grid." Journal of Digital Imaging 22, no. 1, 1 - 10.
  • Cooper, L.; Sertel, O.; Kong, J.; Lozanski, G.; Huang, K.; Gurcan, M.N, 2009, "Feature-Based Registration of Histopathology Images with Different Stains: An Application for Computerized Follicular Lymphoma Prognosis." Computer Methods and Programs in Biomedicine 96, no. 3, 182 - 192.
  • Ruiz, A.; Sertel, O.; Ujaldon, M.; Catalyurek, U.; Saltz, J.; Gurcan, MN, 2009, "Stroma classification for neuroblastoma on graphics processors." International Journal of Data Mining and Bioinformatics 3, no. 3, 280 - 298.

2008

  • Sertel,Olcay; Kong,Jun; Lozanski,Gerard; Catalyurek,Umit; Saltz,Joel,H; Gurcan,Metin,N, 2008, "Computerized microscopic image analysis of follicular lymphoma." MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2 6915, 691535 -
  • Kong,Jun; Sertel,Olcay; Shimada,Hiroyuki; Boyer,Kim,L; Saltz,Joel,H; Gurcan,Metin,N, 2008, "A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation." MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2 6915, 69151T -
  • Sertel,Olcay; Kong,Jun; Shimada,Hiroyuki; Catalyurek,Umit; Saltz,Joel,H; Gurcan,Metin, 2008, "Computer-aided prognosis of neuroblastoma: Classification of stromal development on whole-slide images." MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2 6915, 69150P -
  • Sertel,Olcay; Kong,Jun; Lozanski,Gerard; Catalyurek,Umit; Saltz,Joel,H; Gurcan,Metin,N, 2008, "Computerized microscopic image analysis of follicular lymphoma." MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2 6915, 691535 -
  • Saltz, JH; Kurc, T; Hastings, S; Langella, S; Oster, S; Ervin, D; Sharma, A; Pan, T; Gurcan, MN; Permar, J; Ferreira, R; Payne, P; Catalyurek, UV; Caserta, E; Leone, G; Ostrowski, MC; Madduri, R; Foster, I; Madhavan, S; Buetow, KH; Shanbhag, K; Siegel, E, 2008, "e-Science, caGrid, and Translational Biomedical Research." IEEE Computer 41, 58 - 66.
  • Sertel,Olcay; Kong,Jun; Lozanski,Gerard; Shana'ah,Anva; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin, 2008, "Texture classification using nonlinear color quantization: Application to histopathological image analysis." 2008 IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH AND SIGNAL PROCESSING, VOLS 1-12 5300, 597 - 600.
  • Prescott,Jeffrey,W; Zhang,Dongqing; Wang,Jian,Z; Mayr,Nina,A; Yuh,William,TC; Saltz,Joel; Gurcan,Metin, 2008, "Cancer treatment outcome prediction by assessing temporal change: application to cervical cancer." MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2 6915, 69152X -
  • Kumar, V. S.; Narayanan, S.; Kurc, T. M.; Kong, J.; Gurcan, M. N.; Saltz, J. H., 2008, "Supporting analysis and semantic querying in large biomedical image datasets." IEEE Computer 41, no. 4, 52 - 59.
  • Kong, J.; Sertel, O.; Shimada, H.; Boyer, K.; Saltz, J.; Gurcan, M. N., 2008, "Computer-assisted grading of neuroblastic differentiation." Archies of Pathology & Laboratory Medicine 132, no. 6, 903 - 904.

2007

  • Kong,Jun; Shimada,Hiroyuki; Boyer,Kim; Saltz,Joel; Gurcan,Metin, 2007, "Image analysis for automated assessment of grade of neuroblastic differentiation." 2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3 12, 61 - 64.
  • Kong,Jun; Sertel,Olcay; Shimada,Hiroyuki; Boyer,Kim; Saltz,Joel; Gurcan,Metin, 2007, "Computer-aided grading of neuroblastic differentiation: Multi-resolution and multi-classifier approach." 2007 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING, VOLS 1-7 23, 2777 - 2780.
  • Gurcan,Metin,N; Kong,Jun; Sertel,Olcay; Cambazoglu,B,Barla; Saltz,Joel; Catalyurek,Umit, 2007, "Computerized pathological image analysis for neuroblastoma prognosis.." AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 120, 304 - 308.
  • Gurcan, M. N.; Pan, T. C.; Sharma, A.; Kurc, T. M.; Oster, S.; Langella, S.; Hastings, S. L.; Siddiqui, K. M.; Siegel, E.; Saltz, J. H., 2007, "GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support." Journal of Digital Imaging 20, no. 2, 160 - 171.
  • Pan, T. C.; Gurcan, M. N.; Langella, S.; Oster, S.; Hastings, S. L.; Sharma, A.; Rutt, B.; Ervin, D. W.; Kurc, T. M.; Siddiqui, K. M.; Saltz, J. H.; Siegel, E., 2007, "GridCAD: A grid-based computer-aided detection system." Radiographics 27, 889 - 897.
  • Pan,Tony,C; Gurcan,Metin,N; Langella,Stephen,A; Oster,Scott,W; Hastings,Shannon,L; Sharma,Ashish; Rutt,Benjamin,G; Ervin,David,W; Kurc,Tahsin,M; Siddiqui,Khan,M; Saltz,Joel,H; Siegel,Eliot,L, 2007, "Informatics in radiology: GridCAD: grid-based computer-aided detection system.." Radiographics 27, no. 3, 889 - 897.
  • Kumar,Vijay,S; Kurc,Tahsin; Kong,Jun; Catalyurek,Umit; Gurcan,Metin; Saltz,Joel, 2007, "Performance vs. Accuracy Trade-offs for Large-scale Image Analysis Applications." 2007 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING 34, 100 - 109.

2006

  • Gurcan,Metin,N; Pan,Tony; Shimada,Hiro; Saltz,Joel, 2006, "Image analysis for neuroblastoma classification: segmentation of cell nuclei.." Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference 1, 4844 - 4847.
  • Gurcan,Metin,N; Ernst,Randy; Oto,Aytekin; Worrell,Steve; Hoffmeister,Jeff; Rogers,Steve, 2006, "Measurement of colonic polyp size from virtual colonoscopy studies: Comparison of manual and automated methods." MEDICAL IMAGING 2006: IMAGE PROCESSING, PTS 1-3 6144, 61445B -
  • Gurcan,Metin,N; Pan,Tony; Shimada,Hiro; Saltz,Joel, 2006, "Image analysis for neuroblastoma classification: Segmentation of cell nuclei." 2006 28TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-15 7, 4914 - 4917.

2002

  • Hadjiiski,L; Chan,H,P; Sahiner,B; Petrick,N; Helvie,M,A; Roubidoux,M; Gurcan,M, 2002, "Computer-aided characterization of malignant and benign microcalcification clusters based on the analysis of temporal change of mammographic features." MEDICAL IMAGING 2002: IMAGE PROCESSING, VOL 1-3 4684, 749 - 753.
  • Gurcan,M,N; Chan,H,P; Sahiner,B; Hadjiiskii,L,M; Petrick,N; Helvie,M,A, 2002, "Optimal neural network architecture selection: Effects on computeraided detection of mammographic microcalcifications." MEDICAL IMAGING 2002: IMAGE PROCESSING, VOL 1-3 4684, 1325 - 1330.
  • Sahiner,B; Gurcan,M,N; Chan,H,P; Hadjiiski,L,M; Petrick,N; Helvie,M,A, 2002, "The use of joint two-view information for computerized lesion detection on mammograms: Improvement of microcalcification detection accuracy." MEDICAL IMAGING 2002: IMAGE PROCESSING, VOL 1-3 4684, 754 - 761.
  • Gurcan, M. N.; Chan, H-P.; Sahiner, B.; Hadjiiski, L.; Petrick, N.; Helvie, M. A.;, 2002, "Optimal Neural Network Architecture Selection: Improvement in Computerized Detection of Microcalcifications." Academic Radiology 9, no. 4, 420 - 429.
  • Gurcan, M. N.; Sahiner, B.; Petrick, N.; Chan, H-P.; Kazerooni, E. A.; Cascade, P. N.; Hadjiiski, L. M.;, 2002, "Lung Nodule Dectection on Thoracic Computed Tomography Images: Preliminary Evaluation of a Computer-Aided Diagnosis System." Medical Physics 29, no. 11, 2552 - 2558.

2001

  • Hadjiiski, L.; Sahiner, B.; Chan, H-P.; Petrick, N.; Helvie, M. A.; Gurcan, M. N., 2001, "Analysis of Temporal Change of Mamographic Features: Computer-Aided Classification of Malignant and Benign Breast Masses." Medical Physics 28, no. 11, 2309 - 2317.
  • Gurcan, M. N.; Sahiner, B.; Chan, H-P.; Hadjiiski, L.; Petrick, N., 2001, "Selection of an Optimal Neural Network Architecture for Computer-aided Detection of Microcalcifications- Comparison of Automated Optimization Techniques." Medical Physics 28, no. 9, 1937 - 48.
  • Sahiner, B.; Petrick, N.; Chan, H-P.; Hadjiiski, L. M.; Paramagul, C.; Helvie, M. A.; Gurcan, M. N., 2001, "Computer-aided Characterization of Mammographic Masses: Accuracy of Mass Segmentation and its Effects on Characterization." IEEE Transactions on Medical Imaging 20, no. 12, 1275 - 84.
  • Paquerault,S; Chan,H,P; Sahiner,B; Petrick,N; Hadjiiski,L; Gurcan,M,N; Zhou,C; Helvie,M,A, 2001, "Prediction of object location in different mammographic views using geometrical models." IWDM 2000: 5TH INTERNATIONAL WORKSHOP ON DIGITAL MAMMOGRAPHY 5, 748 - 755.

1999

  • Gurcan, M. N.; Koyuturk, M.; Yildiz, H. S.; Cetin-Atalay, R.; Cetin, A. E., 1999, "Identification of Relative Protein Bands in Polyacrylamide Gel Electrophoresis (PAGE) Using Multiresolution Snake Algorithm." Biotechniques 26, no. 6, 1162 - 1169.
  • Gurcan,M,N; Yardimci,Y; Cetin,A,E, 1999, "Microcalcification segmentation and mammogram image enhancement using nonlinear filtering." PROCEEDINGS OF THE IEEE-EURASIP WORKSHOP ON NONLINEAR SIGNAL AND IMAGE PROCESSING (NSIP'99) 78, 588 - 592.

1998

  • Gurcan, M. N.; Gerek, O. N.; Cetin, A. E., 1998, "Nonlinear Subband Decomposition Structures in GF(N) Arithmetic." Signal Processing 64, no. 2, 209 - 213.

1997

  • Gurcan, M. N.; Yardimci, Y.; Cetin, A. E.; Ansari, R., 1997, "Detection of Microcalcifications in Mammograms Using Higher Order Statistics." IEEE Signal Processing Letters 4, no. 8, 213 - 216.

1996

  • Gerek, O. N.; Gurcan, M. N.; Cetin, A. E., 1996, "Frequency Band Characteristics of Tree-Structured Filter Banks." Electronics Letters 32, no. 8, 724 - 726.

Unknown

  • Niazi K, Yao K, Zynger DL, Clinton SK, Chen J, Koyuturk M, LaFramboise T, Gurcan MN, "Visually meaningful histopathological features for automated grading of prostate cancer." IEEE Journal of Biomedical and Health Informatics
  • Niazi K, Chung JH, Heaton-Johnson KJ, Martinez D, Castellanos R, Irwin MS, Master S, Pawel B, Gurcan MN, Weiser DA, "Advancing diagnostic risk stratification of high-risk neuroblastoma using computerized image analysis and proteomic profiling." Pediatric and Developmental Pathology

Presentations

  • "Image analysis for neuroblastoma classification: Hysteresis thresholding for nuclei segmentation." 2006, Presented at APIII 2006, Vancouver, CA|CAN
  • "Computer-assisted Histopathology: Experience with Neuroblastoma and Follicular Lymphoma." 2008, Presented at Workshop on Bio-image Informatics: Biological Imaging, Computer Vision and Data Mining 2008, Santa Barbara,
  • "Computer vision in neuroblastoma: computer-aided prognosis." 2010, Presented at Advances in Neuroblastoma Research (ANR 2010), Stockholm, SE|SWE
  • "Computer-assisted Medical Image Analysis." 2010, Presented at Invited speaker, invited by Eva Örndahl, PhD, Stockholm, SE|SWE
  • "Automated Lung Nodule Detection in Helical CT Images- False Positive Reduction Strategies." 2001, Presented at 87th Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago,
  • "Computer-assisted Medical Image Analysis." 2010, Morgantown,
  • "Computer-Assisted Histopathological Image Analysis: Expectations and Challenges." 2011, Presented at Trends in Experimental Pathology: Imaging of Model Organisms/Experimental Trends - "Brave New World," Invited by John Tomaszewski, MD., Washington, DC,
  • "Multi-scale analysis of histpathological images: Experience with follicular lymphoma and neuroblastoma." 2011, Presented at NSF-RPI Workshop, Troy,
  • "Accurate Nodule Volume Estimation from Helical CT Images: Comparison of Slice-based and Volume-based Methods." 2002, Presented at 88th Scientific Assembly and Annual Meeting of Radiological Society of North America, Chicago,
  • "Computer-aided Prognosis of Neuroblastoma." 2010, Philadelphia,
  • "Computer-aided Analysis of Virtual Slides for Neuroblastoma." 2006, Presented at Advances of Neuroblastoma Research (ANR) Workshop: Pathology in the 21st Century, Los Angeles,
  • "Selection of an optimal neural network architecture for computer-aided diagnosis:Comparison of automated optimization techniques." 2000, Presented at 86th Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago,
  • "Clinical Image Analysis at BMI." 2009, Presented at OCCBIO 2009, Cleveland, US|USA
  • "gridIMAGE: A Grid Computing Platform for Radiological and Pathological Image Analysis." 2007, Presented at SIIM 2007 Annual Meeting, Providence,
  • "Computer-assisted Biomedical Image Analysis." 2011, Presented at Invited Talk, Invited by Alexandre Cunha, PhD, Pasadena, US|USA
  • "Computer-aided Diagnosis and Prognosis in Pathology." 2011, Presented at Department of Veterinary Biosciences, College of Veterinary Medicine, The Ohio State University, as part of the monthly departmental seminars, invited by the Dean of the College., Columbus,
  • "Knee strength predicts loss of function and decline in physical activity in participants with osteoarthritis: A 2-year followup of the OAI study." 2009, Presented at World Congress on Osteoarthritis, Montreal, CA|CAN
  • "Imaging biomarkers for osteoarthritis research." 2009, Presented at Toward Quantitative Imaging: Reading Room of the Future, RSNA 2009, Chicago,
  • "Computer-assisted identification of boundaries of lesions in cutaneous lymphomas." 2010, Presented at First World Congress for Cutaneous Lymphomas, Chicago,
  • "Optimal Selection of Neural Network Architecture for CAD Using Simulated Annealing." 2000, Presented at 22nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Chicago,
  • "Computer-assisted Microscopic Image Analysis for Clinical Research." 2008, Presented at The Mass Spectroscopy Research Center, Nashville,
  • "Computerized Lung Nodule Detection on Thoracic CT Images: Combined Rule-based and Statistical Classifier for False Positive Reduction." 2000, Presented at Food and Drug Administration, Washington D.C,
  • "Comparison of Simulated Annealing and Genetic Algorithm for Optimization of Neural Network Architectures." 2000, Presented at Food and Drug Administration, Washington,
  • "Image Processing Applications in Molecular Biology and Genetics." 1999, Presented at Seminar Series, Department of Molecular Biology and Genetics, Ankara, TR|TUR
  • "Accurate Nodule Volume Estimation from Helical CT Images: Comparison of Slice-based and Volume-based Methods." 2003, Presented at 89th Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago,
  • "Improvement of Computrized Detection of Microcalcifications using a Convolution Neural Network Architecture Selected by an Automated Optimization Algorithm." 2001, Presented at Medical Image Perception Conference IX, Warrenton,
  • "Computer-aided Diagnosis: Computerized Lung Nodule Detection on Thoracic CT Images." 2000, Presented at Cancer Research Symposium, Ann Arbor,
  • "Computer-aided Image Analysis: A new paradigm for biology and medicine." 2012, Presented at Battelle, Columbus, US|USA
  • "Computer-aided Diagnosis and Prognosis in Pathology." 2012, Presented at Pathology and Laboratory Medicine Ground Rounds, Los Angeles, US|USA
  • "The Six Million Dollar Doctor: How to Enhance Speed and Vision of Doctors?." 2012, Presented at Case Western Reserve University, Department of Computer Science, invited talk as part of the department's monthly talk series. Invited by Dr. Mehmet Koyuturk,
  • "An Engineer’s Quest for Better Diagnosis." 2012, Presented at IEEE Turkey Student Innovation Competition, Invited Talk, Invited by Mustafa Karaman, Ph.D., Istanbul, TR|TUR
  • "Microscopic Image Analysis for Pathology and Biology." 2012, Presented at Monthly Seminar Series, Invited Talk, Invited by Orhan Arikan, Ph.D., Ankara, TR|TUR
  • "Medical Image Analysis: Information-based Visual Decomposition and Modeling." 2013, Presented at IUPUI Invited, Indianapolis, US|USA
  • "Clinical Image Analysis Laboratory at The Ohio State University." 2013, Presented at Battelle Invited, Invited by Aaron Sander, Ph.D., Columbus, US|USA
  • "Medical Image Analysis: Visual Decomposition and Modeling." 2013, Presented at International Workshop on Computational Intelligence for Multimedia Understanding, Antalya, TR|TUR
  • "Medical Image Analysis: Visual Decomposition and Modeling." 2014, Presented at UCSF Radiology Invited Speaker Series, Invited by Duygu Tosun-Turgut, PhD., San Francisco, US|USA
  • "Image analysis algorithms: What can they do for pathology?." 2014, Presented at Annual Digital Pathology Meeting, San Francisco, US|USA
  • "Microscopic Image Analysis: Closing the loop." 2014, Presented at Bioimage Informatics, Leuven, BE|BEL
  • "Histopathological Image Analysis: Now and Future." 2014, Presented at Neurology Department Ground Rounds, Columbus, US|USA
  • "Clinical Image Analysis: Closing the loop." 2014, Presented at Nordic Digital Pathology Symposium, Invited by Claes Lundström, PhD, Uppsala, SE|SWE
  • "Clinical Image Analysis: Affecting Decisions." 2014, Presented at CIM Workshop on Mathematics and Medicine, Invited by Ewert Bengtsson, PhD, Uppsala, SE|SWE
  • "Hot spot detection for histopathological images." 2015, Presented at MMTC Digital Pathology, Invited by Liron Pantowitz, MD., San Francisco, US|USA
  • "How ontologies can help in addressing the big data challenges of pathology imaging: perspectives from a collaborating pathologist and image scientist." 2015, Presented at The Role of Ontology in Big Cancer Data, National Center for Ontological Research, Rockville, US|USA
  • "Digital Image Analysis." 2015, Presented at Digital Pathology Congress, San Diego, US|USA
  • "From Pixels to Diagnosis: Image Analysis for Digital Pathology." 2015, Presented at Pathology Visions, Invited Talk. Invited by Eric Glassy, MD, Chair of Digital Pathology Association., Boston, US|USA
  • "Histopathological Image Analysis: Closing the Loop." 2015, Presented at FDA Invited Speaker. Invited by Berkman Sahiner, PhD., Silver Springs, US|USA
  • "Histopathological Image Analysis: Slides to Information." 2016, Presented at Pathology Department Ground Rounds, Columbus, US|USA
  • "Information-based Visual Decomposition and Modeling of Medical Images." 2013, Presented at Emory Invited, Invited by Joel Saltz, MD, PhD, Atlanta, US|USA
  • "Defining molecular events for targeted therapy of glioblastoma using digital image analysis." 2016, Presented at OSU Comprehensive Cancer Center Ground Rounds, Columbus, US|USA
  • "Radiology to Pathology: Closed Loop Evaluation for Image Analysis." 2016, Presented at Pathology Informatics, Radiology Pathology Convergence Session, Invited lecturer. Invited by Dr. Mark Tuthill, Pittsburgh, US|USA

Papers in Proceedings

2016

  • Niazi KK; Hartman DJ; Pantanowitz L; Gurcan MN "Hotspot detection in pancreatic neuroendocrine tumors: Density approximation by alpha-shape maps." in Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (3 2016). 979110B -
  • Abas, F; Gokozan HN; Goksel B;Otero JJ; Gurcan MN "Interoperative neuropathology of glioma recurrence: Cell detection and classification." in Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (3 2016). 979109 -
  • Niazi KK; Parwani A; Gurcan MN "Computer-assisted bladder cancer grading: alpha-shapes for color space decomposition." in Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (3 2016). 979107 -

2015

  • Niazi,M,Khalid Khan; Weiser,Daniel,A; Pawel,Bruce,R; Gurcan,Metin,N "Characterizing primary refractory neuroblastoma: Prediction of outcome by microscopic image analysis." in Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (1 2015). 942008 -
  • Akakin, Hatice C, Gokozan, Hamza, Otero, Jose, Gurcan, Metin N "An adaptive algorithm for detection of multiple-type, positively stained nuclei in IHC images with minimal prior information: application to OLIG2 staining for gliomas." JOURNAL: "SPIE Medical Imaging." in SPIE Medical Imaging. (1 2015). 942007 - 942007.
  • Gokozan,Hamza; Fauzi,Mohammad,Ahmad; Elder,Brad; Winter,Jessica; Puduvalli,Vinay; Pierson,Christopher; Gurcan,Metin; Otero,Jose "Towards Single Cell Pathway Component Analysis in Diagnostic Pathology: Digitized Image Analysis." JOURNAL: "FASEB JOURNAL." in Experimental Biology Meeting 2015. (4 2015). 1 -

2014

  • Niazi,M,Khalid Khan; Downs-Kelly,Erinn; Gurcan,Metin,N "Hot spot detection for breast cancer in Ki-67 stained slides: Image dependent filtering approach." in 2nd Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (1 2014). 904106 -
  • Fauzi,Mohammad,Faizal Ahmad; Khansa,Ibrahim; Catignani,Karen; Gordillo,Gayle; Sen,Chandan,K; Gurcan,Metin,N "Segmentation and Automated Measurement of Chronic Wound Images: Probability Map Approach." in Conference on Medical Imaging - Computer-Aided Diagnosis. BELLINGHAM, (1 2014). 903507 -
  • Acar E, Lozanski G, Gurcan MN "Tensor-based computation and modeling in multi-resolution digital pathology imaging: Application to Follicular Lymphoma Grading." in 2nd Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (1 2014). 90410C -
  • Fauzi,Mohammad,Faizal Ahmad; Gokozan,Hamza,Numan; Elder,Brad; Puduvalli,Vinay,K; Otero,Jose,J; Gurcan,Metin,N "Classification of Glioblastoma and Metastasis for Neuropathology Intraoperative Diagnosis: A Multi-resolution Textural Approach to Model the Background." in 2nd Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (1 2014). 90410F -
  • Niazi,M,Khalid Khan; Hemminger,Jessica; Kurt,Habibe; Lozanski,Gerard; Gurcan,Metin,N "Grading Vascularity from Histopathological Images based on Traveling Salesman Distance and Vessel Size." in 2nd Conference on Medical Imaging - Digital Pathology. BELLINGHAM, (1 2014). 90410C -
  • Gokozan,H,N; Ahmad,Fauzi,MF; Elder,B; Winter,J; Puduvalli,V,K; Gurcan,M,N; Otero,J,J "Enhancing pathology diagnostic and prognostic reporting using digitized image analysis." JOURNAL: "BRAIN PATHOLOGY." in 18th International Congress of Neuropathology. (9 2014). 58 - 59.

2013

  • Niazi,M,Khalid Khan; Pennell,Michael; Elkins,Camille; Hemminger,Jessica; Jin,Ming; Kirby,Sean; Kurt,Habibe; Miller,Barrie; Plocharczyk,Elizabeth; Roth,Rachel; Ziegler,Rebecca; Shana'ah,Arwa; Racke,Fred; Lozanski,Gerard; Gurcan,Metin,N "Entropy based quantification of Ki-67 positive cell images and its evaluation by a reader study." in 9th Conference on Digital Pathology at the SPIE Medical Imaging Symposium. BELLINGHAM, (1 2013). 86760I -
  • Niazi,M,Khalid Khan; Satoskar,Anjali,A; Gurcan,Metin,N "An Automated Method for Counting Cytotoxic T-cells From CD8 Stained Images of Renal Biopsies." in 9th Conference on Digital Pathology at the SPIE Medical Imaging Symposium. BELLINGHAM, (1 2013). 867606 -

2012

  • Prescott,Jeffrey,W; Best,Thomas,M; Haq,Furqan; Pennell,Michael; Jackson,Rebecca; Gurcan,Metin "Vastus Intermedius Cross-sectional Area Is Associated With Radiographic Severity Of Knee Osteoarthritis." JOURNAL: "JOURNAL OF GENERAL INTERNAL MEDICINE." (7 2012). 253 - 254.
  • Oztan,Basak; Kong,Hui; Gurcan,Metin,N; Yener,Buelent "Follicular Lymphoma Grading using Cell-Graphs and Multi-Scale Feature Analysis." in Conference on Medical Imaging - Computer-Aided Diagnosis. BELLINGHAM, (1 2012). 831516 -
  • Akakin,Hatice,Cinar; Kong,Hui; Elkins,Camille; Hemminger,Jessica; Miller,Barrie; Ming,Jin; Plocharczyk,Elizabeth; Roth,Rachel; Weinberg,Mithcell; Ziegler,Rebecca; Lozanski,Gerard; Gurcan,Metin,N "Automated detection of cells from immunohistochemically-stained tissues: Application to Ki-67 nuclei staining." in Conference on Medical Imaging - Computer-Aided Diagnosis. BELLINGHAM, (1 2012). 831503 -

2011

  • Kong H, Boussaid K, Gurcan MN "Splitting touching cell-clusters on histopathological images." in IEEE ISBI 2011. NEW YORK, (3 2011). 208 - 211.
  • Prescott,Jeffrey,W; Best,Thomas,M; Haq,Furqan; Pennell,Michael; Jackson,Rebecca; Gurcan,Metin "Vastus Intermedius Cross-sectional Area Is Associated With Radiographic Severity Of Knee Osteoarthritis." JOURNAL: "MEDICINE AND SCIENCE IN SPORTS AND EXERCISE." (5 2011). 253 - 254.
  • Kong,Hui; Belkacem-Boussaid,Kamel; Gurcan,Metin "Cell nuclei segmentation for histopathological image analysis." in Conference on Medical Imaging 2011 - Image Processing. BELLINGHAM, (1 2011). 79622R -

2010

  • Ababneh, S.; Gurcan, M.N "An Automated Content-Based Segmentation Framework: Application to MR Images of Knee for Osteoarthritis Research." JOURNAL: "IEEE Proceedings." in 2010 IEEE International Conference on Electro/Information Technology (EIT 2010). (5 2010). 121 - 124.
  • Sertel, O.; Dogtas, B.; Chiu, C.S.; Gurcan, M.N "Muscle histology image analysis for sarcopenia: Registration of successive sessions with distinctive atpase activity." in IEEE ISBI 2010. New York, (4 2010).
  • Belkacem-Boussaid, K.; Pennell, M.; Lozanski, G.; Shana’ah, A.; Gurcan, M.N "Effect of pathologist agreement on evaluating a computer-assisted system: Recognizing centroblasts in follicular lymphoma cases." in IEEE ISBI 2010. New York, (4 2010).
  • Ababneh, S.; Gurcan, M.N "An Efficient Graph-Cut Segmentation for Knee Bone Osteoarthritis Medical Images." JOURNAL: "Proceedings of IEEE." in IEEE International Conference on Electro/Information Technology (EIT 2010). (5 2010). 98 - 103.
  • Sertel O, Catalyurek U, Lozanski G, Shana’ah A, Gurcan MN "An image analysis approach for detecting malignant cells in digitized H&E-stained histology images of follicular lymphoma." in International Conference on Pattern Recognition (ICPR) 2010. New York, (10 2010). 273 - 276.
  • Prescott, JW, Haq F, Best T, Jackson R, Gurcan MN "An analysis of methods for the selection of atlases for use in medical image segmentation." in SPIE Medical Imaging 2010. San Diego, (2 2010).
  • Dundar, M.; Badve, S.; Raykar, V.; Jain, R.; Sertel, O.; Gurcan, M.N "A multiple instance learning approach toward optimal classification of pathology slides: Classifying intraductal breast lesions as a case study." JOURNAL: "Proceedings of ICPR." in International Conference on Pattern Recognition (ICPR) 2010. (8 2010). 88 - 97.
  • Belkacem-Boussaid K, Prescott J, Lozanski G, Gurcan MN Segmentation of follicular regions on H&E slides using matching filter and active contour models. in SPIE Medical Imaging 2010. San Diego, http://www.embc09.org/, (2 2010).
  • Gurcan,Metin,N; Madabhushi,Anant; Rajpoot,Nasir "Pattern Recognition in Histopathological Images: An ICPR 2010 Contest." in 20th International Conference on Pattern Recognition Conference. BERLIN, (1 2010). 226 - 234.

2009

  • Oger, M.; Belhomme, P.; Gurcan, M.N "Classification of low-resolutionvirtual slides from breast tumor sections: Comparison between global and local analysis." in IEEE EMBC 2009. Minneapolis, (9 2009).
  • Mumcuoglu, E.U.; Prescott, J.; Baker, B.N.; Clifford, B.; Long, F.; Castile, R.; Gurcan, M.N "Image Analysis for Cystic Fibrosis: Automatic Lung Airway Wall and Vessel Measurement on CT Images." in IEEE EMBC 2009. Minneapolis, (9 2009).
  • Prescott, J.W.; Priddy, M.; Swanson, M.S.; Haq, F.; Best, T.M.; Powell, K.; Jackson, R.; Gurcan, M.N "An Automated Method for Intramuscular Fat Detection in Quadriceps Muscles for Osteoarthritis Diagnosis." in IEEE EMBC 2009. Minneapolis, (9 2009).
  • Samsi, S.; Krishnamurthy, A.K.; Groseclose, M.; Caprioli, R.M.; Lozanski, G.; Gurcan, M.N "Imaging Mass Spectrometry Analysis for Follicular Lymphoma Grading." in IEEE EMBC 2009. Minneapolis, (9 2009).
  • Prescott, J.W.; Swanson, M.; Powell, K.; Haq, F.; Best, T.; Jackson, R.; Gurcan, M.N "Template-based level-set segmentation using anatomical information." in IEEE ISCIS 2009. Guzelyurt, (9 2009).
  • Belkacem-Boussaid, K.; Sertel, O.; Lozanski, G.; Shana¹aah, A.; Gurcan, M.N "Extraction of color features in the spectral domain to recognize centroblasts in histopathology." in IEEE EMBC 2009. New York, (9 2009).
  • Teodoro, G.; Sachetto, R.; Sertel, O.; Gurcan, M.N.; Meira, W.; Catalyurek, U.V.; Ferreira, R "Coordinating the use of GPU and CPU for improving performance of compute intensive applications." in IEEE Cluster 2009. New Orleans, (8 2009). 437 - 446.
  • Sertel, O.; Catalyurek, U.V.; Shimada, H.; Gurcan, M.N "Computer-aidedprognosis of neuroblastoma: Detection of Mitosis and Karyorrhexis cells in digitized histological images." in IEEE EMBC 2009. Minneapolis, (9 2009).
  • Sertel, O.; Catalyurek, U.V.; Shimada, H.; Gurcan, M.N "A combined computerized-system for classifying digitized whole-slide neuroblastomahistology: Model-based structural features." in MICCAI 2009. London, (9 2009).
  • Prescott, J.W.; Swanson, M.S.; Haq, F.; Best, T.M.; Powell, K.; Jackson, R.; Gurcan, M.N "An Automated Method for Femur Segmentation for Osteoarthritis Research." in IEEE EMBC 2009. Minneapolis, (9 2009).

2008

  • Prescott, J.; Zhang, D.; Wang, J.; Mayer, N.; Saltz, J. H.; Gurcan , M. N. "Outcome Prediction for Radiation Treatment of Cervical Cancer by Assessing tumor Heterogeneity and Temporal Change." in SIIM 2008. Seattle, (5 2008).
  • Kong, J.; Sertel, O.; Shimada, H.; Boyer, K.L.; Saltz, J.H.; Gurcan, M.N. "A Multi-resolution Image analysis System for Computer-assisted Grading of Neuroblastoma Differentiation." in SPIE Medical Imaging. San Diego, (1 2008).
  • Sertel, O.; Kong, J.; Lozanski, G.; Catalyurek, U.; Saltz, J. H.;Gurcan, M. N. "Computerized Microscopic Image analysis of Follicular Lymphoma." in SPIE Medical Imaging. San Diego, (2 2008).
  • Sertel, O.; Kong, J.; Shimada, H.; Catalyurek, U.V.; Saltz, J.H.; Gurcan, M.N. "Computer-aided Prognosis of Neuroblastoma: Classification of Stromal Development on Whole-slide Images." in SPIE Medical Imaging. San Diego, (2 2008).
  • Prescott, J.; Saltz, J.H.; Gurcan, M.N.; Donqing, Z.; Wang, J.; Mayr, N.; Yuh, W. "Cancer Treatment Outcome Prediction by Assessing Temporal Change: Application to Cervical Cancer." JOURNAL: "MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2." in SPIE Medical Imaging Conference. (1 2008). 69152X -
  • Qureshi, H.; Sertel, O.; Rajpoot, N.; Wilson, R.; Gurcan, M. N. "Adaptive discriminant wavelet packet transform and local binary patterns for meningioma subtype classification." in MICCAI. New York, (9 2008).
  • Sertel, O.; Kong, J.; Catalyurek, U.V.; Lozanski, G.; Shanaah, A.; Saltz, J.H.; Gurcan, M.N. "Texture Classification Using Nonlinear Color Quantization: application to Histopathological Image analysis." JOURNAL: "IEEE ICASSP." in IEEE ICASSP. (1 2008). 10 - 13.
  • Ruiz, A.; Kong, J.; Ujaldon, M.; Boyer, K; Saltz, J.H.; Gurcan, M.N. "Pathological Image Segmentation for Neuroblastoma Using the GPU." in IEEE ISBI. Paris, (5 2008).

2007

  • Kong,Jun; Sertel,Olcay; Gewirtz,Amy; Shana'ah,Arwa; Racke,Frederick; Zhao,John; Boyer,Kim; Catalyurek,Umit; Gurcan,Metin; Lozanski,Gerard "Development of computer based system to aid pathologists in histological grading of follicular lymphomas." JOURNAL: "BLOOD." in 49th Annual Meeting of the American-Society-of-Hematology. (11 2007). 974A - 974A.
  • Kong, J.; Shimada, H.; Boyer, K;Saltz, J.H.; Gurcan, M.N. "Image Analysis for Automated Assessment of Grade of Neuroblastic Differentiation." JOURNAL: "IEEE ISBI2007." in IEEE ISBI2007: International Symposium on Biomedical Imaging: From nano to macro. (4 2007). 12 - 15.
  • Kumar, V.S.; Kurc, T.M.; Kong, J.; Catalyurek, U.V.;Gurcan, M.N.; Saltz, J.H. "Performance vs. Accuracy Trade-offs for Large-scale Image Analysis Applications." in Proceedings of the IEEE Cluster 2007. Austin, (9 2007). 7 - 10.
  • Pan,Tony,C; Gurcan,Metin,N; Langella,Stephen,A; Oster,Scott,W; Hastings,Shannon,L; Sharma,Ashish; Rutt,Benjamin,G; Ervin,David,W; Kurc,Tahsin,M; Siddiqui,Khan,M; Saltz,Joel,H; Siegel,Eliot,L "GridCAD: Grid-based computer-aided detection system." JOURNAL: "RADIOGRAPHICS." in 91st Scientific Assembly and Annual Meeting of the Radiological-Society-of-North-America. (5 2007). 889 - 897.
  • Kong, J.; Sertel, O.; Shimada H.; Boyer, K.; Saltz, J.H; Gurcan, M.N. "Computer-aided Grading of Neuroblastic Differentiation: Multi-resolution and Multi-classifier Approach." in IEEE ICIP 2007: International Conference on Image Processing. San Antonio, (9 2007). 8 - 11.
  • Ruiz, A.; Sertel, O.; Ujaldon, M.; Catalyurek, U.V.; Gurcan, M.N.; Saltz, J.H. Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma. JOURNAL: "2007 IEEE International Conference on Bioinformatics and Biomedicine." in 2007 IEEE International Conference on Bioinformatics and Biomedicine. http://doi.ieeecomputersociety.org/10.1109/BIBM.2007.56, (1 2007). 12 - 15.
  • Gurcan, M.N.; Kong, J.; Sertel, O.; Cambazoglu, B.B.; Saltz, J.H.; Catalyurek, U.V. "Computerized Pathological Image Analysis For Neuroblastoma Prognosis." in 2007 AMIA Annual Symposium. (1 2007).
  • Erdal, S.; Catalyurek, U.V.; Kamal, J.; Gurcan, M.N. "Flexible Patient Information Search and Retrieval Framework: Pilot Implementation." JOURNAL: "SPIE Symposium." in PACS and Imaging Informatics, SPIE Symposium on Medical Imaging. (2 2007). 1123 - 1129.
  • Cambazoglu, B.B.; Sertel, O.; Kong, J.; Saltz, J.H.; Gurcan, M.N; Catalyurek, U.V. "Efficient Processing of Pathological Images Using the Grid: Computer-aided Grading of Neuroblastic Differentiation: Multi-resolution and Multi-classifieer Approach." in Challenges of Large Scale Applications in Distributed Environments (CLADE 2007). Monterey Bay, (6 2007).

2006

  • Gurcan, M. N.; Pan, T.; Shimada, H.; Saltz, J. "Image analysis for neuroblastoma classification: Segmentation of cell nuclei." JOURNAL: "28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Conference." in 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Conference. (9 2006). 10 - 13.
  • Gurcan, M.N.; Ernst R.; Oto, A.; Worrell, S; Hoffmeister, J.W.; Rogers, S. "Measurement of Colonic Polyp Size From Virtual Colonoscopic Studies: Comparison of Manual and Automated Methods." JOURNAL: "SPIE Medical Imaging." in SPIE Medical Imaging. (2 2006). 3423 -

2005

  • Gurcan, M.N.; Stein, A.; Hoffmeister, J.W. "Polyp Size Measurements: Comparison of Size Estimation Methods for Axial Supine and Prone Views." in International Symposium on Virtual Colonoscopy. Boston, (10 2005).

2004

  • Gurcan, M.N.; Hardie, R.C.; Allen, B.H.; Rogers, S.K.; Dozier, D.E.; Burns, R.V.; Hoffmeister, J.W. "Automated Nodule Volume Estimation from CT Images: Minimax-Based Estimation." in PACS 2004. (1 2004).

2003

  • Gurcan, M.N.; Hardie, R.C.; Rogers, S.K.;Dozer, D.E.; Allen, B.H.; Burns, R.V.; Hoffmeister, J.W. "Automated Global Matching of Temporal Thoracic Helical CT Studies: Feasibility Study." JOURNAL: "Proceedings of CARS." in Proceedings of CARS. (1 2003). 1031 - 1036.

2002

  • Gurcan,M,N; Allen,B,H; Rogers,S,K; Dozer,D; Burns,R; Hoffmeister,J "Accurate nodule volume estimation from helical CT images: Comparison of slice-based and volume-based methods." JOURNAL: "RADIOLOGY." in 88th Scientific Assembly and Annual Meeting of the Radiological-Society-of-North-America. (11 2002). 183 - 184.
  • Hadjiiski, L.M.; Chan, H.P.; Sahiner, B.; Petrick, N.; Helvie, M.A.; Roubidoux, M.; Gurcan, M.N. "Computer-Aided Characterization of Malignant and Benign Microcalcification Clusters Based on the Analysis of Temporal Change of Mammographic Features." in Proceedings of SPIE Medical Imaging 2002. (1 2002). 749 - 753.
  • Gurcan, M.N.; Chan, H-P.; Sahiner, B.; Hadjiiki, L.; Petrick, N.; Helvie, M.A. "Optimal Neural Network Architecture Selection: Effects on Computer -Aided Dectection of Mammographic Microcalcifications;." JOURNAL: "Proceedings of SPIE Medical Imaging 2002." in Proceedings of SPIE Medical Imaging 2002. (1 2002). 1325 - 1328.
  • Sahiner, B.; Gurcan, M.N.; Chan, H.P.;Hadkiiski, L.M.;Petrick, N.; Helvie, M.A. "The Use of Joint Two-View Information for Computerized Lesion Detection on Mammograms: Improvement of Microcalcification Detection Accuracy." in Proceedings of SPIE Medical Imaging 2002. (1 2002). 754 - 761.

2001

  • Hadjiiski, L.; Sahiner, B.; Chan, H-P.; Petrick, N.; Helvie, M.A.; Gurcan, M.N. "Analysis of Temporal Change of Mamographic Features: Computer-Aided Classification of Malignant and Benign Breast Masses." in SPIE Medical Imaging. San Diego, (1 2001). 17 - 22.
  • Gurcan, M.N.; Petrick, N.; Sahiner, B.; Chan, H-P.; Cascade, P.N.; Kazerooni, EA; Hadjiiski, L.M.; "Computyerized Lung Nodule Detection on Thoracic CT Images: Combined Rule-based and Sattistical Classifier for False Positivie Reduction." in SPIE Medical Imaging 2001. San Diego, CA, (1 2001). 17 - 22.

2000

  • Gurcan, M.N.; Sahiner, B.; Chan, H-P.; Hadjiiski, L.; Petrick, N. "Optimal Selection of Neural Network Architecture for CAD Using Simulated Annealing." in 22nd Annual International Conference of theIEEE Engineering in Medicine and Biology Society. Chicago, (1 2000). 3052 - 3055.
  • Chan, H-P.; Hadjiiski, L.; Petrick, N.; Helvie, M.A.; Sahiner, B.; Paramagul, C.; Gurcan, M.N.; Lo, S-C.B.; Freeman, M.T; Dorman, DD; Berbaum, KS "Pilot Clinical Study of a Computer-aided Diagnostic Workstation for Mammography." in Era of Hope: Department of Defense Breast Cancer Research Program Meeting. Atlanta, (1 2000). 241 -
  • Paquerault, S.; Chan, H-P.; Sahiner, B.; Petrick, N.; Gurcan, M.N. "Prediction of Object Location in Different Views Using Geometrical Models." in 5th International Workshop on Digital Mammography. Toronto, (1 2000). 748 - 755.

1999

  • Gurcan, M.N.; Yardimci, Y.; Cetin, A.E. "Influence Function Based Gaussianity Tests for Detection of Microcalcifications in Mammogram Images,." in IEEE International Conference on Image Processing (ICIP'99). Kobe, (1 1999). 407 - 411.
  • Gurcan, M.N.; Yardimci, Y.; Cetin, A.E. "Microcalcification Segmentation and Mammogram Image Enhancement Using Nonlinear Filtering." in Proceedings of 1999 IEEE-Eurasip Workshop on Nonlinear Signal and Image Processing (NSIP'99). Anatlya, (1 1999). 588 - 592.

1998

  • Gurcan, M.N; Yardimci, Y.; Cetin, A.E "2-D Adaptive Filtering Based Gaussianity Tests in Microcalcification Detection." in Proceedings of SPIE Visual Communications and Image Processing Conference. San Jose, (1 1998). 625 - 633.
  • Gurcan, M.N.; Koyuturk, M.; Yildiz, H.Z.; Cetin-Atalay, R; Cetin, A.E "Identification of Relative Protein Bands in Polyacrylamide Gel Electrophoresis (PAGE) Using Multiresolution Snake Algorithm." in Proceedings of IEEE-SP International Symposium on Time-Frequency/Time-Scale Analysis. (1 1998). 277 - 280.

1997

  • Gurcan, M. N.; Yardimci, Y.; Cetin, A. E.; Ansari, R. "Automated Detection and Enhancement of Microcalcifications in Mammograms Using Nonlinear Subband Decomposition." in Proceedings of IEEE, International Conference on Acoustics, Speech, and Signal Processing. Munich, (4 1997). 3069 - 3072.
  • Gurcan, M.N.; Yardimci, Y.; Cetin, A.E.; Ansari, R "Detection of Microcalcifications in Mammograms Using Nonlinear Subband Decomposition and Outlier Labeling." in Proceedings of SPIE Visual Commincations and Image Processing Conference. San Jose, (1 1997). 909 - 918.

1996

  • Gurcan, M.N.; Gerek, O.N.; Cetin, A.E "A Morphological Subband Decomposition Structure Using GF(n) Arithmetic." in Proceedings of IEEE International Conference on Image Processing. (1 1996). 253 - 256.
  • Gurcan, M.N.; Gerek, O.N.; Cetin, A.E "Binary Morphological Subband Decomposition for Image Coding." in Proceedings of IEEE, International Symposium on Time Frequency and Time Scale Analysis. Paris, (1 1996). 357 - 360.

Patents

  • Gurcan, MN. "Computer-aided Detection Methods in Volumetric Imagery." Patent number: 7,236,620
  • Gurcan, MN; Hardie, RC; Rogers, SK. "Shape Estimates and Temporal Registration of Lesions and Nodules." Patent number: 7,486,812
  • Gurcan, MN; Gordillo G; Sen S. "System and method for segmentation and automated measurement of chronic wound images."
  • Gurcan, MN; Abas F; Lozanski G. "Virtual Image Generator of Immunohistochemical Stained Tissue Sections."